usefragsph not on There are 38 ligand heavy atoms Ligand center of coords (x y z): 7.55852631578947 5.60515789473684 20.9718421052632 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1287 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 763 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 762 Number of spheres polar: 234, nonpolar: 360, out of current total: 762 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -2.42207 17.42016 -4.34883 15.56111 10.97699 30.88991 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 393 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 348 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 324 Spheres center of coords (x y z): 6.36118469135802 6.14383685185185 19.9904528703704 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 4.88528343453453 Final number of output spheres is: 60 Number of polar spheres: 15 Number of nonpolar spheres: 34 Number of spheres that are near neither polar nor nonpolar receptor atoms: 11 Final number of spheres that are from crystallographic ligand: 38