usefragsph not on There are 29 ligand heavy atoms Ligand center of coords (x y z): 8.03841379310345 5.95651724137931 22.1757931034483 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1128 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 674 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 672 Number of spheres polar: 212, nonpolar: 274, out of current total: 672 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -1.96028 18.01450 -4.03271 14.80826 12.24707 32.08444 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 372 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 322 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 285 Spheres center of coords (x y z): 6.14365933333334 6.01891540350877 20.7658240701754 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 5.32817238770797 Final number of output spheres is: 60 Number of polar spheres: 22 Number of nonpolar spheres: 23 Number of spheres that are near neither polar nor nonpolar receptor atoms: 15 Final number of spheres that are from crystallographic ligand: 29