usefragsph not on
There are 28 ligand heavy atoms
Ligand center of coords (x y z): 8.25467857142857 5.55625 21.5643928571429
Using crystallographic ligand as spheres for output
Starting number of spheres from sph/sph cluster 0: 1117
FINISHED READING IN FILE sph/sph CLUSTER 0 
Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 656
Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 646
Number of spheres polar: 199, nonpolar: 280, out of current total: 646
Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -1.72376 18.19842 -4.12697 15.54053 11.64441 31.46377
Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 233
Number of spheres after second pass removing spheres absolutely <0.8 from each other: 190
Crystallographic spheres are present, so doing continuity based on crystallographic spheres
After continuity checking, number of spheres is: 162
Spheres center of coords (x y z): 6.12507327160494 6.48027604938272 19.9496377777778
Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8)
Average weighted-distance for final elimination is: 5.3147222060323
Final number of output spheres is: 45
Number of polar spheres: 10
Number of nonpolar spheres: 19
Number of spheres that are near neither polar nor nonpolar receptor atoms: 16
Final number of spheres that are from crystallographic ligand: 28