usefragsph not on There are 34 ligand heavy atoms Ligand center of coords (x y z): 8.15026470588235 5.03229411764706 20.9868823529412 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1248 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 732 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 730 Number of spheres polar: 184, nonpolar: 357, out of current total: 730 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -1.83652 18.00748 -4.96686 14.89909 10.99126 30.95811 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 246 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 202 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 185 Spheres center of coords (x y z): 6.66980064864865 5.27561378378378 19.5194513513513 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 5.54435096511357 Final number of output spheres is: 45 Number of polar spheres: 12 Number of nonpolar spheres: 26 Number of spheres that are near neither polar nor nonpolar receptor atoms: 7 Final number of spheres that are from crystallographic ligand: 34