usefragsph not on There are 35 ligand heavy atoms Ligand center of coords (x y z): 7.84397142857143 5.12262857142857 20.3872285714286 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1196 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 752 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 750 Number of spheres polar: 276, nonpolar: 332, out of current total: 750 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -2.12970 17.79370 -4.87435 15.09300 10.76014 30.29926 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 239 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 196 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 146 Spheres center of coords (x y z): 7.15418643835616 5.18132143835617 18.8746573972603 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 4.220024599528 Final number of output spheres is: 45 Number of polar spheres: 13 Number of nonpolar spheres: 29 Number of spheres that are near neither polar nor nonpolar receptor atoms: 3 Final number of spheres that are from crystallographic ligand: 35