usefragsph not on There are 34 ligand heavy atoms Ligand center of coords (x y z): 15.2187941176471 5.39947058823529 28.4552058823529 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1887 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 1031 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 1031 Number of spheres polar: 287, nonpolar: 426, out of current total: 1031 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 5.81490 25.20803 -4.55985 15.37020 18.47560 38.45158 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 368 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 292 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 280 Spheres center of coords (x y z): 17.43667675 8.09763635714286 26.3205018928571 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 6.8985435665692 Final number of output spheres is: 45 Number of polar spheres: 15 Number of nonpolar spheres: 21 Number of spheres that are near neither polar nor nonpolar receptor atoms: 9 Final number of spheres that are from crystallographic ligand: 34