usefragsph not on There are 32 ligand heavy atoms Ligand center of coords (x y z): -4.475625 9.04325 21.96815625 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1246 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 918 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 912 Number of spheres polar: 374, nonpolar: 382, out of current total: 912 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -14.41389 5.08007 -0.94399 19.03541 12.23611 31.82123 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 447 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 386 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 330 Spheres center of coords (x y z): -3.94903272727273 10.7307211212121 20.1466066363637 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 5.67396612611291 Final number of output spheres is: 60 Number of polar spheres: 21 Number of nonpolar spheres: 31 Number of spheres that are near neither polar nor nonpolar receptor atoms: 8 Final number of spheres that are from crystallographic ligand: 32