usefragsph not on There are 32 ligand heavy atoms Ligand center of coords (x y z): -4.6566875 8.93875 22.17246875 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1188 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 887 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 883 Number of spheres polar: 322, nonpolar: 390, out of current total: 883 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -14.50345 5.06489 -1.05768 18.87900 12.39391 31.94850 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 433 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 389 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 345 Spheres center of coords (x y z): -4.82409078260869 9.79711695652173 20.3406125507246 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 5.42973418023154 Final number of output spheres is: 60 Number of polar spheres: 25 Number of nonpolar spheres: 27 Number of spheres that are near neither polar nor nonpolar receptor atoms: 8 Final number of spheres that are from crystallographic ligand: 32