usefragsph not on There are 34 ligand heavy atoms Ligand center of coords (x y z): 9.66967647058824 63.4147941176471 3.72308823529412 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1144 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 747 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 740 Number of spheres polar: 238, nonpolar: 342, out of current total: 740 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -0.21805 16.83817 53.43134 73.35825 -6.20793 13.60989 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 377 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 323 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 273 Spheres center of coords (x y z): 8.98570245421246 63.8346524908425 1.96123728937729 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 4.7500379901977 Final number of output spheres is: 60 Number of polar spheres: 14 Number of nonpolar spheres: 29 Number of spheres that are near neither polar nor nonpolar receptor atoms: 17 Final number of spheres that are from crystallographic ligand: 34