usefragsph not on There are 29 ligand heavy atoms Ligand center of coords (x y z): 7.9608275862069 5.31744827586207 21.7719310344828 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1037 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 653 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 651 Number of spheres polar: 180, nonpolar: 321, out of current total: 651 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -2.02966 17.75100 -4.56527 14.56500 11.80569 31.62877 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 336 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 284 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 251 Spheres center of coords (x y z): 6.05397151394423 5.25521250996016 20.3911694820717 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 5.2731498619586 Final number of output spheres is: 60 Number of polar spheres: 16 Number of nonpolar spheres: 31 Number of spheres that are near neither polar nor nonpolar receptor atoms: 13 Final number of spheres that are from crystallographic ligand: 29