usefragsph not on
There are 40 ligand heavy atoms
Ligand center of coords (x y z): 6.55805 6.119225 22.2931
Using crystallographic ligand as spheres for output
Starting number of spheres from sph/sph cluster 0: 1176
FINISHED READING IN FILE sph/sph CLUSTER 0 
Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 734
Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 731
Number of spheres polar: 242, nonpolar: 322, out of current total: 731
Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -3.33981 16.47267 -3.82619 16.03370 12.36795 32.01771
Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 249
Number of spheres after second pass removing spheres absolutely <0.8 from each other: 203
Crystallographic spheres are present, so doing continuity based on crystallographic spheres
After continuity checking, number of spheres is: 187
Spheres center of coords (x y z): 5.6817650802139 5.58346877005347 20.3628578074866
Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8)
Average weighted-distance for final elimination is: 4.98875303302943
Final number of output spheres is: 45
Number of polar spheres: 11
Number of nonpolar spheres: 28
Number of spheres that are near neither polar nor nonpolar receptor atoms: 6
Final number of spheres that are from crystallographic ligand: 40