usefragsph not on There are 39 ligand heavy atoms Ligand center of coords (x y z): -6.7275641025641 -5.81217948717949 22.1589230769231 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1216 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 748 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 747 Number of spheres polar: 231, nonpolar: 345, out of current total: 747 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -16.59765 3.14500 -15.71000 4.15956 12.29769 32.11188 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 371 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 318 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 292 Spheres center of coords (x y z): -6.29841318493151 -5.54825280821917 20.5298918835616 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 4.78784624785032 Final number of output spheres is: 60 Number of polar spheres: 17 Number of nonpolar spheres: 34 Number of spheres that are near neither polar nor nonpolar receptor atoms: 9 Final number of spheres that are from crystallographic ligand: 39