usefragsph not on
There are 30 ligand heavy atoms
Ligand center of coords (x y z): 8.058 5.88536666666667 21.9531333333333
Using crystallographic ligand as spheres for output
Starting number of spheres from sph/sph cluster 0: 1283
FINISHED READING IN FILE sph/sph CLUSTER 0 
Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 672
Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 664
Number of spheres polar: 228, nonpolar: 287, out of current total: 664
Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -1.91738 17.96000 -4.07700 15.64985 12.13542 31.56413
Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 239
Number of spheres after second pass removing spheres absolutely <0.8 from each other: 188
Crystallographic spheres are present, so doing continuity based on crystallographic spheres
After continuity checking, number of spheres is: 163
Spheres center of coords (x y z): 6.06915165644172 5.87807742331288 20.2848504294478
Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8)
Average weighted-distance for final elimination is: 5.5623052672959
Final number of output spheres is: 45
Number of polar spheres: 15
Number of nonpolar spheres: 24
Number of spheres that are near neither polar nor nonpolar receptor atoms: 6
Final number of spheres that are from crystallographic ligand: 30