usefragsph not on There are 30 ligand heavy atoms Ligand center of coords (x y z): 8.04603333333333 5.42233333333333 21.9252 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1220 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 715 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 700 Number of spheres polar: 220, nonpolar: 301, out of current total: 700 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -1.95381 17.99400 -4.48303 15.35387 11.92866 31.90260 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 387 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 336 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 286 Spheres center of coords (x y z): 6.65374293706293 5.50403625874126 19.6073171678322 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 5.4770435545775 Final number of output spheres is: 60 Number of polar spheres: 15 Number of nonpolar spheres: 32 Number of spheres that are near neither polar nor nonpolar receptor atoms: 13 Final number of spheres that are from crystallographic ligand: 30