usefragsph not on There are 38 ligand heavy atoms Ligand center of coords (x y z): 9.66605263157894 63.9053947368421 3.58397368421053 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1328 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 740 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 734 Number of spheres polar: 231, nonpolar: 317, out of current total: 734 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -0.27790 18.19333 53.90765 73.71861 -6.36284 13.54811 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 248 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 204 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 165 Spheres center of coords (x y z): 8.55659333333333 64.7176269090909 0.896676121212121 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 4.60614876681672 Final number of output spheres is: 45 Number of polar spheres: 7 Number of nonpolar spheres: 32 Number of spheres that are near neither polar nor nonpolar receptor atoms: 6 Final number of spheres that are from crystallographic ligand: 38