usefragsph not on There are 37 ligand heavy atoms Ligand center of coords (x y z): -4.28394594594595 9.81635135135135 22.7192162162162 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1160 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 676 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 674 Number of spheres polar: 236, nonpolar: 277, out of current total: 674 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -14.27280 4.68150 -0.07797 19.73275 12.74010 32.41571 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 344 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 298 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 275 Spheres center of coords (x y z): -4.70182774545454 10.0673308727273 20.3383570909091 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 5.05776818853593 Final number of output spheres is: 60 Number of polar spheres: 21 Number of nonpolar spheres: 29 Number of spheres that are near neither polar nor nonpolar receptor atoms: 10 Final number of spheres that are from crystallographic ligand: 37