usefragsph not on There are 37 ligand heavy atoms Ligand center of coords (x y z): 9.77386486486486 63.9945405405405 3.81548648648649 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1103 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 666 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 663 Number of spheres polar: 206, nonpolar: 281, out of current total: 663 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -0.22184 19.74899 53.99600 73.85912 -6.11791 13.78769 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 239 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 196 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 138 Spheres center of coords (x y z): 8.58110485507246 63.3155575362319 1.56969485507246 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 4.03644853822873 Final number of output spheres is: 45 Number of polar spheres: 10 Number of nonpolar spheres: 30 Number of spheres that are near neither polar nor nonpolar receptor atoms: 5 Final number of spheres that are from crystallographic ligand: 37