usefragsph not on There are 32 ligand heavy atoms Ligand center of coords (x y z): 7.35315625 6.513375 22.8225625 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 880 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 593 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 592 Number of spheres polar: 199, nonpolar: 218, out of current total: 592 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -2.10850 15.47672 -3.44268 16.49997 12.84912 32.75536 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 218 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 169 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 156 Spheres center of coords (x y z): 5.39057525641026 6.81436814102564 20.9371463461538 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 5.01154587407814 Final number of output spheres is: 45 Number of polar spheres: 10 Number of nonpolar spheres: 23 Number of spheres that are near neither polar nor nonpolar receptor atoms: 12 Final number of spheres that are from crystallographic ligand: 32