usefragsph not on
There are 41 ligand heavy atoms
Ligand center of coords (x y z): 36.0199512195122 30.7599024390244 16.3644390243902
Using crystallographic ligand as spheres for output
Starting number of spheres from sph/sph cluster 0: 1425
FINISHED READING IN FILE sph/sph CLUSTER 0 
Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 806
Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 803
Number of spheres polar: 228, nonpolar: 393, out of current total: 803
Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 26.15817 46.00443 20.82378 40.75615 6.47949 26.36144
Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 431
Number of spheres after second pass removing spheres absolutely <0.5 from each other: 373
Crystallographic spheres are present, so doing continuity based on crystallographic spheres
After continuity checking, number of spheres is: 328
Spheres center of coords (x y z): 35.6215427134146 30.8734901829268 19.0614508841463
Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8)
Average weighted-distance for final elimination is: 4.99901449321755
Final number of output spheres is: 60
Number of polar spheres: 22
Number of nonpolar spheres: 32
Number of spheres that are near neither polar nor nonpolar receptor atoms: 6
Final number of spheres that are from crystallographic ligand: 41