usefragsph not on There are 44 ligand heavy atoms Ligand center of coords (x y z): 36.7002727272727 30.7738636363636 16.5352727272727 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1334 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 787 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 782 Number of spheres polar: 217, nonpolar: 383, out of current total: 782 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 26.90964 46.68332 20.93298 40.76873 6.69946 26.48534 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 276 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 235 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 215 Spheres center of coords (x y z): 35.4535021395349 30.8296868372093 18.5185826511628 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 5.19703407025308 Final number of output spheres is: 45 Number of polar spheres: 10 Number of nonpolar spheres: 28 Number of spheres that are near neither polar nor nonpolar receptor atoms: 7 Final number of spheres that are from crystallographic ligand: 44