usefragsph not on There are 36 ligand heavy atoms Ligand center of coords (x y z): 21.7870833333333 29.5971111111111 21.9521111111111 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1308 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 650 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 648 Number of spheres polar: 198, nonpolar: 296, out of current total: 648 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 11.91828 31.44070 19.59739 39.52221 11.95675 31.88485 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 231 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 188 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 164 Spheres center of coords (x y z): 22.1887459146342 30.7659226829268 20.1737260365854 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 5.02177556296153 Final number of output spheres is: 45 Number of polar spheres: 13 Number of nonpolar spheres: 21 Number of spheres that are near neither polar nor nonpolar receptor atoms: 11 Final number of spheres that are from crystallographic ligand: 36