usefragsph not on There are 37 ligand heavy atoms Ligand center of coords (x y z): 7.38994594594595 30.7947297297297 16.9620540540541 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1334 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 746 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 745 Number of spheres polar: 180, nonpolar: 386, out of current total: 745 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -2.59552 16.86549 20.79475 40.74274 7.76524 26.87356 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 387 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 333 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 297 Spheres center of coords (x y z): 6.25657838383839 30.4131801010101 18.9189094276094 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 5.13584603801042 Final number of output spheres is: 60 Number of polar spheres: 14 Number of nonpolar spheres: 38 Number of spheres that are near neither polar nor nonpolar receptor atoms: 8 Final number of spheres that are from crystallographic ligand: 37