usefragsph not on There are 32 ligand heavy atoms Ligand center of coords (x y z): 2.1616875 -8.645875 -13.3505625 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1210 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 744 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 740 Number of spheres polar: 228, nonpolar: 316, out of current total: 740 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -7.81099 10.25222 -18.62980 0.22459 -23.29511 -3.37496 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 392 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 343 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 312 Spheres center of coords (x y z): 1.75253846153846 -11.3132309615385 -13.5669425320513 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 5.46827515804128 Final number of output spheres is: 60 Number of polar spheres: 18 Number of nonpolar spheres: 33 Number of spheres that are near neither polar nor nonpolar receptor atoms: 9 Final number of spheres that are from crystallographic ligand: 32