usefragsph not on There are 34 ligand heavy atoms Ligand center of coords (x y z): 33.1607058823529 8.16411764705883 10.5288529411765 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1288 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 709 WARNING: removing a crystallographic sphere that is distance 1.18903237971049 angstroms from closest receptor atom Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 697 Number of spheres polar: 199, nonpolar: 273, out of current total: 697 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 23.25432 43.15352 -1.82273 18.16385 0.56750 20.50267 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 426 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 382 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 345 Spheres center of coords (x y z): 33.4533673913044 7.41066127536231 8.03533115942029 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 5.61158316538874 Final number of output spheres is: 60 Number of polar spheres: 21 Number of nonpolar spheres: 23 Number of spheres that are near neither polar nor nonpolar receptor atoms: 16 Final number of spheres that are from crystallographic ligand: 33