There are 9 ligand heavy atoms Ligand center of coords (x y z): 9.79133333333333 34.591 28.2437777777778 useligsph not on Starting number of spheres from sph/sph cluster 0: 749 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (12 angstroms): 668 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 668 Number of spheres polar: 284, nonpolar: 222, out of current total: 668 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -1.42548 21.16022 23.98226 46.53986 16.55498 40.05746 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 222 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 178 No crystallographic spheres present, so determining sphere nearest center of ligand (x y z): 9.79133333333333 34.591 28.2437777777778 Center point: 71 xyz: 10.00099 34.39135 28.64200 After continuity checking, number of spheres is: 107 Final number of output spheres is: 107 Number of polar spheres: 37 Number of nonpolar spheres: 28 Number of spheres that are near neither polar nor nonpolar receptor atoms: 42 Final number of spheres that are from crystallographic ligand: 0