usefragsph not on
There are 9 ligand heavy atoms
Ligand center of coords (x y z): 9.79133333333333 34.591 28.2437777777778
Using crystallographic ligand as spheres for output
Starting number of spheres from sph/sph cluster 0: 749
FINISHED READING IN FILE sph/sph CLUSTER 0 
Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 552
Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 552
Number of spheres polar: 222, nonpolar: 198, out of current total: 552
Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -0.17413 19.72495 24.99517 44.48152 18.30986 38.20725
Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 181
Number of spheres after second pass removing spheres absolutely <0.8 from each other: 154
Crystallographic spheres are present, so doing continuity based on crystallographic spheres
After continuity checking, number of spheres is: 103
Spheres center of coords (x y z): 7.50065262135922 38.5160622330097 25.5433885436893
Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8)
Average weighted-distance for final elimination is: 6.74069839773414
Final number of output spheres is: 45
Number of polar spheres: 25
Number of nonpolar spheres: 16
Number of spheres that are near neither polar nor nonpolar receptor atoms: 4
Final number of spheres that are from crystallographic ligand: 9