usefragsph not on There are 9 ligand heavy atoms Ligand center of coords (x y z): 9.79133333333333 34.591 28.2437777777778 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 749 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 552 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 552 Number of spheres polar: 222, nonpolar: 198, out of current total: 552 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -0.17413 19.72495 24.99517 44.48152 18.30986 38.20725 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 274 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 237 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 162 Spheres center of coords (x y z): 7.49303432098765 38.2176609876543 25.4431830864198 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 6.39633486346653 Final number of output spheres is: 60 Number of polar spheres: 34 Number of nonpolar spheres: 21 Number of spheres that are near neither polar nor nonpolar receptor atoms: 5 Final number of spheres that are from crystallographic ligand: 9