usefragsph not on
There are 28 ligand heavy atoms
Ligand center of coords (x y z): 10.35 7.63714285714286 51.6198571428571
Using crystallographic ligand as spheres for output
Starting number of spheres from sph/sph cluster 0: 1115
FINISHED READING IN FILE sph/sph CLUSTER 0 
Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 616
WARNING: removing a crystallographic sphere that is distance 1.10277740274273 angstroms from closest receptor atom
Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 613
Number of spheres polar: 138, nonpolar: 242, out of current total: 613
Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 0.39497 20.20036 -2.30695 17.59344 41.97592 61.55761
Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 260
Number of spheres after second pass removing spheres absolutely <0.8 from each other: 224
Crystallographic spheres are present, so doing continuity based on crystallographic spheres
After continuity checking, number of spheres is: 211
Spheres center of coords (x y z): 9.29283464454976 9.24476279620853 55.0445190995261
Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8)
Average weighted-distance for final elimination is: 6.0179608576956
Final number of output spheres is: 45
Number of polar spheres: 15
Number of nonpolar spheres: 26
Number of spheres that are near neither polar nor nonpolar receptor atoms: 4
Final number of spheres that are from crystallographic ligand: 27