usefragsph not on There are 28 ligand heavy atoms Ligand center of coords (x y z): 10.35 7.63714285714286 51.6198571428571 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1115 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 616 WARNING: removing a crystallographic sphere that is distance 1.10277740274273 angstroms from closest receptor atom Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 613 Number of spheres polar: 138, nonpolar: 242, out of current total: 613 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 0.39497 20.20036 -2.30695 17.59344 41.97592 61.55761 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 381 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 344 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 327 Spheres center of coords (x y z): 9.21211146788991 9.08144657492355 55.0488580733945 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 5.9374939501114 Final number of output spheres is: 60 Number of polar spheres: 19 Number of nonpolar spheres: 36 Number of spheres that are near neither polar nor nonpolar receptor atoms: 5 Final number of spheres that are from crystallographic ligand: 27