usefragsph not on There are 32 ligand heavy atoms Ligand center of coords (x y z): 33.97053125 6.6379375 10.86940625 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1495 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 858 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 855 Number of spheres polar: 232, nonpolar: 407, out of current total: 855 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 23.98578 43.80165 -3.32719 16.63753 0.87158 20.78460 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 319 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 277 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 266 Spheres center of coords (x y z): 34.7106933834586 5.19759657894737 9.65163800751879 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 6.97240873190741 Final number of output spheres is: 45 Number of polar spheres: 17 Number of nonpolar spheres: 20 Number of spheres that are near neither polar nor nonpolar receptor atoms: 8 Final number of spheres that are from crystallographic ligand: 32