usefragsph not on There are 35 ligand heavy atoms Ligand center of coords (x y z): 29.0706285714286 6.83734285714286 8.31322857142857 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1432 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 701 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 695 Number of spheres polar: 220, nonpolar: 240, out of current total: 695 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 19.08593 38.75873 -2.97783 16.78188 -1.60781 17.96713 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 276 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 231 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 207 Spheres center of coords (x y z): 29.6750022705314 6.57847004830919 5.31539357487923 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 4.70012836377035 Final number of output spheres is: 45 Number of polar spheres: 16 Number of nonpolar spheres: 24 Number of spheres that are near neither polar nor nonpolar receptor atoms: 5 Final number of spheres that are from crystallographic ligand: 35