usefragsph not on
There are 24 ligand heavy atoms
Ligand center of coords (x y z): 9.88120833333333 7.33825 51.1582083333333
Using crystallographic ligand as spheres for output
Starting number of spheres from sph/sph cluster 0: 1244
FINISHED READING IN FILE sph/sph CLUSTER 0 
Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 769
Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 768
Number of spheres polar: 229, nonpolar: 250, out of current total: 768
Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -0.02752 19.87564 -2.62290 17.22010 42.44648 61.08895
Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 444
Number of spheres after second pass removing spheres absolutely <0.5 from each other: 394
Crystallographic spheres are present, so doing continuity based on crystallographic spheres
After continuity checking, number of spheres is: 369
Spheres center of coords (x y z): 8.85078766937669 9.02990344173442 54.2959017615176
Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8)
Average weighted-distance for final elimination is: 6.25865092109782
Final number of output spheres is: 60
Number of polar spheres: 22
Number of nonpolar spheres: 31
Number of spheres that are near neither polar nor nonpolar receptor atoms: 7
Final number of spheres that are from crystallographic ligand: 24