usefragsph not on There are 38 ligand heavy atoms Ligand center of coords (x y z): 33.5655 6.04747368421052 10.249 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1528 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 845 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 840 Number of spheres polar: 236, nonpolar: 383, out of current total: 840 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 23.67580 43.52710 -3.94955 16.03928 0.24908 20.24035 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 325 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 279 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 262 Spheres center of coords (x y z): 34.0063735496183 4.90517683206107 8.63879679389313 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 6.04315048923391 Final number of output spheres is: 45 Number of polar spheres: 16 Number of nonpolar spheres: 22 Number of spheres that are near neither polar nor nonpolar receptor atoms: 7 Final number of spheres that are from crystallographic ligand: 38