usefragsph not on There are 50 ligand heavy atoms Ligand center of coords (x y z): 37.1381 7.27612 10.3916 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1748 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 1052 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 1045 Number of spheres polar: 278, nonpolar: 458, out of current total: 1045 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 27.24219 47.09632 -2.71720 17.23771 0.44839 20.39064 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 611 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 530 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 497 Spheres center of coords (x y z): 36.423485331992 6.54608531187123 9.71599434607646 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 5.65278939350255 Final number of output spheres is: 60 Number of polar spheres: 21 Number of nonpolar spheres: 32 Number of spheres that are near neither polar nor nonpolar receptor atoms: 7 Final number of spheres that are from crystallographic ligand: 50