usefragsph not on There are 21 ligand heavy atoms Ligand center of coords (x y z): 21.1809523809524 4.90271428571429 2.11990476190476 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1423 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 620 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 620 Number of spheres polar: 217, nonpolar: 301, out of current total: 620 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 12.09393 31.11757 -5.08430 14.89940 -7.85700 11.62457 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 331 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 283 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 186 Spheres center of coords (x y z): 20.3587337096774 3.15076510752688 2.04712091397849 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 3.53524459961373 Final number of output spheres is: 60 Number of polar spheres: 14 Number of nonpolar spheres: 35 Number of spheres that are near neither polar nor nonpolar receptor atoms: 11 Final number of spheres that are from crystallographic ligand: 21