usefragsph not on There are 19 ligand heavy atoms Ligand center of coords (x y z): 21.0123157894737 4.95363157894737 1.53205263157895 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1578 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 694 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 694 Number of spheres polar: 270, nonpolar: 325, out of current total: 694 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 11.04967 30.99053 -5.01801 14.94634 -8.45462 10.87132 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 345 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 299 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 181 Spheres center of coords (x y z): 20.2132347513812 2.76700337016574 2.18588033149171 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 3.78671911863688 Final number of output spheres is: 60 Number of polar spheres: 14 Number of nonpolar spheres: 37 Number of spheres that are near neither polar nor nonpolar receptor atoms: 9 Final number of spheres that are from crystallographic ligand: 19