usefragsph not on There are 27 ligand heavy atoms Ligand center of coords (x y z): 20.942037037037 4.61237037037037 0.594925925925926 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1635 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 715 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 715 Number of spheres polar: 296, nonpolar: 307, out of current total: 715 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 11.03479 30.90574 -5.38605 14.57519 -9.38444 10.58910 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 391 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 328 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 203 Spheres center of coords (x y z): 20.3302066009852 2.78827798029557 1.82775142857143 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 3.59001673808863 Final number of output spheres is: 60 Number of polar spheres: 17 Number of nonpolar spheres: 37 Number of spheres that are near neither polar nor nonpolar receptor atoms: 6 Final number of spheres that are from crystallographic ligand: 27