usefragsph not on There are 27 ligand heavy atoms Ligand center of coords (x y z): 20.5367777777778 4.74518518518519 1.30811111111111 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1696 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 690 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 690 Number of spheres polar: 240, nonpolar: 331, out of current total: 690 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 11.45500 30.53592 -5.23556 14.74481 -8.64784 11.05504 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 371 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 314 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 206 Spheres center of coords (x y z): 20.1561648058252 2.95797742718447 2.13550674757282 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 3.37540194484602 Final number of output spheres is: 60 Number of polar spheres: 17 Number of nonpolar spheres: 26 Number of spheres that are near neither polar nor nonpolar receptor atoms: 17 Final number of spheres that are from crystallographic ligand: 27