There are 36 ligand heavy atoms Ligand center of coords (x y z): 4.56938888888889 7.66691666666667 17.5428055555556 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 19491 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (12 angstroms): 10472 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 10459 Number of spheres polar: 5874, nonpolar: 3285, out of current total: 10459 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -7.42320 16.56580 -4.33160 19.66540 5.55300 29.54020 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 1570 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 614 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 555 Spheres center of coords (x y z): -1.32908432432433 7.25351963963964 18.1928908108108 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 10.6525939224791 Final number of output spheres is: 120 Number of polar spheres: 51 Number of nonpolar spheres: 53 Number of spheres that are near neither polar nor nonpolar receptor atoms: 16 Final number of spheres that are from crystallographic ligand: 36