usefragsph not on
There are 31 ligand heavy atoms
Ligand center of coords (x y z): 2.38816129032258 7.03148387096774 7.8351935483871
Using crystallographic ligand as spheres for output
Starting number of spheres from sph/sph cluster 0: 1479
FINISHED READING IN FILE sph/sph CLUSTER 0 
Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 797
Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 797
Number of spheres polar: 257, nonpolar: 311, out of current total: 797
Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -7.60102 12.36181 -2.92294 17.03109 -2.13972 17.83212
Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 449
Number of spheres after second pass removing spheres absolutely <0.5 from each other: 393
Crystallographic spheres are present, so doing continuity based on crystallographic spheres
After continuity checking, number of spheres is: 360
Spheres center of coords (x y z): -0.441391111111111 6.90995944444444 9.43981016666667
Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8)
Average weighted-distance for final elimination is: 5.40848738757334
Final number of output spheres is: 60
Number of polar spheres: 23
Number of nonpolar spheres: 29
Number of spheres that are near neither polar nor nonpolar receptor atoms: 8
Final number of spheres that are from crystallographic ligand: 31