usefragsph not on There are 35 ligand heavy atoms Ligand center of coords (x y z): 10.6105142857143 3.12185714285714 6.04491428571429 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1434 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 764 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 764 Number of spheres polar: 243, nonpolar: 361, out of current total: 764 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 0.61107 20.57659 -6.79800 13.11101 -3.90091 15.95135 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 429 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 365 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 334 Spheres center of coords (x y z): 8.84147434131737 0.436399401197605 4.51723703592814 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 5.51900964686733 Final number of output spheres is: 60 Number of polar spheres: 30 Number of nonpolar spheres: 30 Number of spheres that are near neither polar nor nonpolar receptor atoms: 0 Final number of spheres that are from crystallographic ligand: 35