There are 35 ligand heavy atoms Ligand center of coords (x y z): 10.6105142857143 3.12185714285714 6.04491428571429 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 13491 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (12 angstroms): 9945 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 9945 Number of spheres polar: 6647, nonpolar: 2746, out of current total: 9945 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -1.38800 22.60520 -8.87800 15.11960 -5.95300 18.04240 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 1633 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 636 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 561 Spheres center of coords (x y z): 8.15401711229946 1.83066310160428 3.55060142602496 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 9.38961500805499 Final number of output spheres is: 120 Number of polar spheres: 70 Number of nonpolar spheres: 47 Number of spheres that are near neither polar nor nonpolar receptor atoms: 3 Final number of spheres that are from crystallographic ligand: 35