usefragsph not on There are 22 ligand heavy atoms Ligand center of coords (x y z): 8.71095454545455 4.01168181818182 21.7268636363636 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1298 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 865 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 865 Number of spheres polar: 268, nonpolar: 467, out of current total: 865 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -1.23536 18.55113 -5.96656 14.00069 11.93654 31.64668 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 266 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 221 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 181 Spheres center of coords (x y z): 11.4877491712707 7.12038558011049 20.4383558563536 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 6.513830998608 Final number of output spheres is: 45 Number of polar spheres: 11 Number of nonpolar spheres: 34 Number of spheres that are near neither polar nor nonpolar receptor atoms: 0 Final number of spheres that are from crystallographic ligand: 22