usefragsph not on There are 18 ligand heavy atoms Ligand center of coords (x y z): 6.25955555555556 3.28444444444444 18.2298888888889 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1533 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 812 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 812 Number of spheres polar: 309, nonpolar: 427, out of current total: 812 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -2.37049 16.23943 -6.59833 13.27671 8.28571 28.18519 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 397 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 327 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 285 Spheres center of coords (x y z): 10.030977754386 6.58753754385964 18.5570776491228 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 7.9037506861769 Final number of output spheres is: 60 Number of polar spheres: 23 Number of nonpolar spheres: 37 Number of spheres that are near neither polar nor nonpolar receptor atoms: 0 Final number of spheres that are from crystallographic ligand: 18