Distance from surface specified: 1.80 There are 18 ligand heavy atoms Ligand center of coords (x y z): 6.25955555555556 3.28444444444444 18.2298888888889 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 13310 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (14 angstroms): 11125 WARNING: removing a crystallographic sphere that is distance 1.97315838188423 angstroms from closest receptor atom Number of spheres after removing too far (>7 angstroms) and too close to receptor (<2 angstroms): 10714 Number of spheres polar: 6232, nonpolar: 3434, out of current total: 10714 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -7.67340 20.25680 -10.70600 17.25280 4.23800 32.20840 Number of spheres after removing spheres too close to each other (approximately <1.4 angstroms): 1303 Number of spheres after second pass removing spheres absolutely <0.9 from each other: 710 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 667 Spheres center of coords (x y z): 8.16158620689655 5.11802128935532 23.5039772113943 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 12.9784407118105 Final number of output spheres is: 200 Number of polar spheres: 142 Number of nonpolar spheres: 54 Number of spheres that are near neither polar nor nonpolar receptor atoms: 4 Final number of spheres that are from crystallographic ligand: 17