There are 18 ligand heavy atoms Ligand center of coords (x y z): 6.25955555555556 3.28444444444444 18.2298888888889 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 13310 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (12 angstroms): 9032 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 9032 Number of spheres polar: 5446, nonpolar: 2786, out of current total: 9032 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -5.69520 18.20980 -8.70940 15.28420 6.24500 30.22780 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 1256 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 569 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 453 Spheres center of coords (x y z): 10.2484233995585 9.12043973509934 22.0262379690949 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 11.6487062297701 Final number of output spheres is: 120 Number of polar spheres: 74 Number of nonpolar spheres: 42 Number of spheres that are near neither polar nor nonpolar receptor atoms: 4 Final number of spheres that are from crystallographic ligand: 18