usefragsph not on There are 4 ligand heavy atoms Ligand center of coords (x y z): 60.516 -5.5055 -0.333 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 554 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 407 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 406 Number of spheres polar: 140, nonpolar: 139, out of current total: 406 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 51.35616 66.27908 -15.46867 4.47341 -9.89060 8.55068 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 156 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 122 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 116 Spheres center of coords (x y z): 57.4837488793103 -4.4514699137931 1.35904603448276 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 8.66586836805626 Final number of output spheres is: 45 Number of polar spheres: 21 Number of nonpolar spheres: 9 Number of spheres that are near neither polar nor nonpolar receptor atoms: 15 Final number of spheres that are from crystallographic ligand: 4