usefragsph not on There are 6 ligand heavy atoms Ligand center of coords (x y z): 60.1951666666667 -4.23183333333333 -0.306666666666667 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 772 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 463 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 443 Number of spheres polar: 146, nonpolar: 151, out of current total: 443 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 50.57430 68.71465 -14.20988 5.70160 -8.75680 8.65239 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 186 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 154 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 146 Spheres center of coords (x y z): 56.993734520548 -2.88908671232877 0.809060547945204 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 7.57708978415666 Final number of output spheres is: 45 Number of polar spheres: 21 Number of nonpolar spheres: 12 Number of spheres that are near neither polar nor nonpolar receptor atoms: 12 Final number of spheres that are from crystallographic ligand: 6