usefragsph not on There are 33 ligand heavy atoms Ligand center of coords (x y z): -26.2451212121212 28.5398787878788 5.24915151515151 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1004 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 486 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 473 Number of spheres polar: 122, nonpolar: 205, out of current total: 473 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -36.23712 -16.24800 20.71099 35.83072 -4.72930 15.19730 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 187 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 171 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 151 Spheres center of coords (x y z): -27.284759205298 29.9962713907285 3.87437059602649 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 4.77457335141756 Final number of output spheres is: 45 Number of polar spheres: 9 Number of nonpolar spheres: 21 Number of spheres that are near neither polar nor nonpolar receptor atoms: 15 Final number of spheres that are from crystallographic ligand: 33