usefragsph not on There are 33 ligand heavy atoms Ligand center of coords (x y z): -26.1479696969697 28.3003636363636 43.8093636363636 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 999 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 480 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 464 Number of spheres polar: 120, nonpolar: 214, out of current total: 464 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -36.14607 -16.21475 20.81169 35.55725 33.81171 53.54747 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 195 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 164 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 137 Spheres center of coords (x y z): -27.6646471532847 30.1857877372263 42.7472543065693 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 4.47827462644277 Final number of output spheres is: 45 Number of polar spheres: 11 Number of nonpolar spheres: 24 Number of spheres that are near neither polar nor nonpolar receptor atoms: 10 Final number of spheres that are from crystallographic ligand: 33